Installation¶
To install
pip install git+git://github.com/vsoch/nidmviewer.git
Running Examples¶
Python (server)¶
#!/usr/bin/python
from nidmviewer.viewer import generate
from glob import glob
import os
# HTML FOR EMBEDDING #####################################################
ttl_files = glob("fsl/*.ttl")
html_snippet = generate(ttl_files=ttl_files)
# LOCAL BROWSER ##########################################################
httpd = generate(ttl_files=nidm_files,base_image=standard_brain,view_in_browser=True)
Command Line¶
When installing with setup.py, an executable, nidmviewer is installed in your bin to view nidm files on the fly:
nidmviewer fsl/nidm.ttl
You can see the basic usage by typing the command:
nidmviewer
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
nidmviewer: error: too few arguments
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
command line or server tool to view or compare nidm results.
positional arguments:
ttl List of comma separated ttl files to parse.
base base image (standard brain map) to use for the viewer
background.